PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_34519AA27.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 252aa    MW: 28154.9 Da    PI: 6.4451
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_34519AA27.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC138.41.9e-43751772101
                  NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                            l++fw++q   ie+at +k+h + l ri+ki+kade v+misaeaPv++skace++ le+t+rsw+ +eenkr+ lkksd+aaav+rt
  Traes_7AL_34519AA27.1  75 LQQFWAQQrseIEQATGIKKHPVQLKRIRKIMKADEGVHMISAEAPVVFSKACEMLTLEMTMRSWMVTEENKRQILKKSDVAAAVART 162
                            89*****99999**************************************************************************** PP

                  NF-YC  87 difdflvdivprdel 101
                            d++dfl di+  de+
  Traes_7AL_34519AA27.1 163 DVYDFLADIIQMDEM 177
                            **********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.69E-2244168IPR009072Histone-fold
Gene3DG3DSA:1.10.150.600.00158108IPR001606ARID DNA-binding domain
PfamPF008081.9E-1398159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-26109172IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGDVAAGSHV YPASAYPPGA TVAAPPGITP VLPVHSQRHH IFPANPAQLS AQNQLMYEQS  60
QQYQQQLQQL HQRRLQQFWA QQRSEIEQAT GIKKHPVQLK RIRKIMKADE GVHMISAEAP  120
VVFSKACEML TLEMTMRSWM VTEENKRQIL KKSDVAAAVA RTDVYDFLAD IIQMDEMEEE  180
GVGLHRAGPP PPLGAPAGAY PYYYPPQLQV PGAAMVHGGQ QVPQVHLPHV WIDLQEQQEK  240
EHHAEDQQSE SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-26641728117HapE
4g92_C1e-26641728117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.12e-79PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-52NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5H7650.0W5H765_WHEAT; Uncharacterized protein
STRINGORGLA06G0202500.11e-80(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-47nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]